Primer Set: ARTIC v5.3.2


IGV Visualization:


Download Primer Set BED
Download Sequence FASTA

Primers:

Name Locus Category Sequence
SARS-CoV-2_400_10_LEFT_0 AAGTAAATGAGTTCGCCTGTGTTGTG
SARS-CoV-2_400_10_RIGHT_0 CAGTGAGGACAATCAGACAAC
SARS-CoV-2_400_11_LEFT_0 AAGATTGGTTAGATGATGATAGTCAACAA
SARS-CoV-2_400_11_RIGHT_0 TTGTGTTTTAAGCGGACACAATCT
SARS-CoV-2_400_12_LEFT_0 GAATCTGATGATTACATAGCTACTAATGGA
SARS-CoV-2_400_12_RIGHT_0 AAGTTAAGCCATTTATAACTGAAAGTAAAC
SARS-CoV-2_400_13_LEFT_0 TAAAAATCTCTATGACAAACTTGTTTCAAGCTT
SARS-CoV-2_400_13_RIGHT_0 CTGTGGTTATACCTACTAAAAAGGCTGGTGGCA
SARS-CoV-2_400_14_LEFT_0 CATCACTTTCTTAAAGAAAGATGCTCCAT
SARS-CoV-2_400_14_RIGHT_0 TATACAGCGTAAATATAAGGGTATTAAAATA
SARS-CoV-2_400_15_LEFT_0 AGAAACACGCAAATTAATGCCT
SARS-CoV-2_400_15_RIGHT_0 GCTGGTTCCTATAAAGATTGGTCCTAT
SARS-CoV-2_400_16_LEFT_0 TTACTTCTTCTTCTAAAACACCTGAAGAACATT
SARS-CoV-2_400_16_RIGHT_0 CACATGAAGGTAAAACATTTTATGTTTTAC
SARS-CoV-2_400_17_LEFT_0 TGGTCCAACTTATTTGGATGGAGCTGA
SARS-CoV-2_400_17_RIGHT_0 TAGCCTACTGTAATAAGACAGTAGGTGAGTT
SARS-CoV-2_400_18_LEFT_0 ATGCTTATTACAGAGCAAGGGCTGGT
SARS-CoV-2_400_18_RIGHT_0 TTACTTGTGCTAGTGAGTACACTGGTAA
SARS-CoV-2_400_19_LEFT_0 TGATGTCAGCACCACCTGCTCAGTA
SARS-CoV-2_400_19_RIGHT_0 ATAATTTTAAGTTTGTATGTGATAATATCAA
SARS-CoV-2_400_1_LEFT_1 TCTGTTCTCTAAACGAACTTTAAAATCTGTG
SARS-CoV-2_400_1_RIGHT_1 AGTTGAAAAAGGCGTTTTGCCTCAACTT
SARS-CoV-2_400_20_LEFT_0 AGTTACTTATAAATTGGATGGTGTTGTTTGTA
SARS-CoV-2_400_20_RIGHT_0 CACGTATAAACCAAATACCTGGTGTATACGT
SARS-CoV-2_400_21_LEFT_0 AAATTGTTACATAAACCTATTGTTTGGCATGTT
SARS-CoV-2_400_21_RIGHT_0 CTAGTCTTACTATTAAGAAACCTAATGAATTAT
SARS-CoV-2_400_22_LEFT_0 AGAAGAGGTTGGCCACACAGATCTAAT
SARS-CoV-2_400_22_RIGHT_0 TGTCTAGAGGCTTCATTTAATTATTTGAAGTCA
SARS-CoV-2_400_23_LEFT_0 TTAAAGCATCTATGCCGACTACTATAGCAAA
SARS-CoV-2_400_23_RIGHT_0 ATGGGATTTAACTGCTTTTGGCTTAGTTGC
SARS-CoV-2_400_24_LEFT_0 TTTAGACACCTATCCTTCTTTAGAAACTATACAA
SARS-CoV-2_400_24_RIGHT_0 GAATGTACAACTATTGTTAATGGTGTT
SARS-CoV-2_400_25_LEFT_0 TAGACGGTTGTAATTCATCAACTTGT
SARS-CoV-2_400_25_RIGHT_0 TTAACTTAGACAACCTGAGAGCTAATAACAC
SARS-CoV-2_400_26_LEFT_0 TTGATAAAGCTGGTCAAAAGACTTATGAA
SARS-CoV-2_400_26_RIGHT_0 AATGTCTTATCTACTTTTATTTCAGCAGCTCGG
SARS-CoV-2_400_27_LEFT_0 ACACTAGTTGCAACTGCAGAAGCTGAA
SARS-CoV-2_400_27_RIGHT_0 ACCTTTTAAGTTGACATGTGCAACTACTAG
SARS-CoV-2_400_28_LEFT_0 TTCATGTCATTGTCTGAACAACTACGAAAA
SARS-CoV-2_400_28_RIGHT_0 GGTAGTTATACTAATGACAAAGCTT
SARS-CoV-2_400_29_LEFT_0 TTTTGCTAACAAACATGCTGATTTTGACA
SARS-CoV-2_400_29_RIGHT_0 CACACGTTATGTGCTCATGGAT
SARS-CoV-2_400_2_LEFT_0 CTTTGGAGACTCCGTGGAGGAG
SARS-CoV-2_400_2_RIGHT_0 TGATCCTTATGAAGATTTTCAAGAA
SARS-CoV-2_400_30_LEFT_0 AGATGCTTCTGGTAAGCCAGTACCATATT
SARS-CoV-2_400_30_RIGHT_0 TAGCTGGTGGTATTGTAGCTATCGTA
SARS-CoV-2_400_31_LEFT_1 AGGAGTTTTCTGTGGTGTAGATGCT
SARS-CoV-2_400_31_RIGHT_0 TAACAATTGCTTATATCATTTGTATTTCCACAA
SARS-CoV-2_400_32_LEFT_0 CTGTTATTTACTTGTACTTGACATTTTATCTTA
SARS-CoV-2_400_32_RIGHT_0 GTCATCTCGCAAAGGCTCTCAA
SARS-CoV-2_400_33_LEFT_0 CAAGTATTTTAGTGGAGCAATGGATACAACTAG
SARS-CoV-2_400_33_RIGHT_0 CTCAGGGTTATTGGACATTCTATGCAAAA
SARS-CoV-2_400_34_LEFT_0 CTCATTCGTAAGTCTAATCATAATTTCTTG
SARS-CoV-2_400_34_RIGHT_0 TATGGACCTTTTGTTGACAGGCAAACAG
SARS-CoV-2_400_35_LEFT_0 ATGCACCATATGGAATTACCAACTGGAGTT
SARS-CoV-2_400_35_RIGHT_0 CTTTATTAGAAGATGAATTTACACCTTTTG
SARS-CoV-2_400_36_LEFT_0 TATGTGTGCTTCATTAAAAGAATTACTGCAAAA
SARS-CoV-2_400_36_RIGHT_0 TTTTAATATGGTCTATATGCCTGCTAGTTGG
SARS-CoV-2_400_37_LEFT_0 ATGCATTTCTCTGTTTGTTTTTGTTACCT
SARS-CoV-2_400_37_RIGHT_0 TTGGCCAGAGGTATTGTTTTTA
SARS-CoV-2_400_38_LEFT_0 ATAATCTCTGTTACTTCTAACTACTCAGGTG
SARS-CoV-2_400_38_RIGHT_0 TCTAAAATGTCAGATGTAAAGTGCACATCAG
SARS-CoV-2_400_39_LEFT_0 TGTTGGGTGTTGGTGGCAAACCTTGT
SARS-CoV-2_400_39_RIGHT_0 TAATGGTGATTCTGAAGTTGTTCT
SARS-CoV-2_400_3_LEFT_1 TAAAGGAGCTGGTGGCCATAGTT
SARS-CoV-2_400_3_RIGHT_0 TTGAAATTAAATTGGCAAAGAAATTTGAC
SARS-CoV-2_400_40_LEFT_0 CATATGCAGCTTTTGCTACTGCTCA
SARS-CoV-2_400_40_RIGHT_0 CCAGACTATAACACATATAAAAATACGTGTGAT
SARS-CoV-2_400_41_LEFT_0 TTGTGTTCCCTTGAACATAATACCT
SARS-CoV-2_400_41_RIGHT_0 TGTACTTGCACTGTTATCCGATTTA
SARS-CoV-2_400_42_LEFT_0 CAATGCGTTAGCTTACTACAAC
SARS-CoV-2_400_42_RIGHT_0 ACCAATCACTAATTGTGTTAAGATG
SARS-CoV-2_400_43_LEFT_0 TAGATGCTGCTAAAGCTTACAAAG
SARS-CoV-2_400_43_RIGHT_0 GGGTTTGCGGTGTAAGTGCAGC
SARS-CoV-2_400_44_LEFT_0 CGAACCCATGCTTCAGTCAG
SARS-CoV-2_400_44_RIGHT_0 ACTAAATACACAATGGCAGACCTCGTCT
SARS-CoV-2_400_45_LEFT_0 GTTTAGAATAGACGGTGACATGGTACCAC
SARS-CoV-2_400_45_RIGHT_0 GTTCCTGTTGTAGATTCTTATTAT
SARS-CoV-2_400_46_LEFT_0 ACTGGTATGATTTCGGTGATTTCATAC
SARS-CoV-2_400_46_RIGHT_0 TATTTGTTGATGGTGTTCCATTTGTAGTTT
SARS-CoV-2_400_47_LEFT_0 TTATTCTCTACAGTGTTCCCACCTACAAGTTT
SARS-CoV-2_400_47_RIGHT_0 ACTTCTTCTTTGCTCAGGATGGTAATGCTG
SARS-CoV-2_400_48_LEFT_0 TGTCTAAGGGTTTCTTTAAGGAAGG
SARS-CoV-2_400_48_RIGHT_0 TATGCCATTAGTGCAAAGAATAGAGCTCGC
SARS-CoV-2_400_49_LEFT_0 ATATACAAAACGTAATGTCATCCCTACTA
SARS-CoV-2_400_49_RIGHT_0 TATAGATTAGCTAATGAGTGTGCTCAAGTA
SARS-CoV-2_400_4_LEFT_0 CTTGGTACACGGAACGTTCTGAAAA
SARS-CoV-2_400_4_RIGHT_0 AAATGCTGTTGTTAAAATTTATTGTCCAGC
SARS-CoV-2_400_50_LEFT_0 TTGCTCGCAAACATACAACGTGTT
SARS-CoV-2_400_50_RIGHT_0 GTTGTGTGTTTCAATAGCACTTATGC
SARS-CoV-2_400_51_LEFT_0 GAGTTTTACGCATATTTGCGTAAACATTT
SARS-CoV-2_400_51_RIGHT_0 TACCCACTTACTAAACATCCTAATCAGGAGT
SARS-CoV-2_400_52_LEFT_2 ATGATTGAACGGTTCGTGTCTTTAGC
SARS-CoV-2_400_52_RIGHT_2 GTTGTGATGTCACAGATGTGACT
SARS-CoV-2_400_53_LEFT_0 ACGTAGACCATTCTTATGTTGTAAAT
SARS-CoV-2_400_53_RIGHT_0 AGGAGACATTTAAACTGTCTTATGGTATT
SARS-CoV-2_400_54_LEFT_1 TGCAGCAGAAACGCTCAAAGCTA
SARS-CoV-2_400_54_RIGHT_1 ATGAGTTTTCTAGCAATGTTGCAAATTAT
SARS-CoV-2_400_55_LEFT_1 ATGTTAGAATTACTGGCTTATACCCAACACTC
SARS-CoV-2_400_55_RIGHT_1 ATAGTTGTCTTTGATGAAATTTCAATGGC
SARS-CoV-2_400_56_LEFT_0 GAAGGCATTAAAATATTTGCCTATAGATAA
SARS-CoV-2_400_56_RIGHT_0 TGCTGAAATTGTTGACACTGTG
SARS-CoV-2_400_57_LEFT_0 AACCAGAATATTTCAATTCAGTGTGTAGA
SARS-CoV-2_400_57_RIGHT_0 TATTCACTCAAACCACTGAAACAGCTC
SARS-CoV-2_400_58_LEFT_0 ACTCAAACTGTTGATTCATCACAGGG
SARS-CoV-2_400_58_RIGHT_0 TAGAAGACTCATCTCTATGATGGGTTTTAAA
SARS-CoV-2_400_59_LEFT_0 TAAATTCAAAACTGAAGGTTTATGTGTTGACA
SARS-CoV-2_400_59_RIGHT_0 GGAATGTAGTGCGTATAAAGATT
SARS-CoV-2_400_5_LEFT_0 TGAGAATTTGACTAAAGAAGGTGCCACT
SARS-CoV-2_400_5_RIGHT_0 TTAATGAAGAGATCGCCATTATTTTGGCATCT
SARS-CoV-2_400_60_LEFT_0 TCAATTTAAACACCTCATACCACT
SARS-CoV-2_400_60_RIGHT_0 AGCTAGTTGTGATGCAATCATGACT
SARS-CoV-2_400_61_LEFT_0 AAAGCAACCATGATCTGTATTGTCAA
SARS-CoV-2_400_61_RIGHT_0 TATGCCTATTTTGGAATTGCAATGT
SARS-CoV-2_400_62_LEFT_2 ACAGCCTTGTAGTGACAAAGCTTAT
SARS-CoV-2_400_62_RIGHT_0 GGTGCTGTCTGTAGACATCATGCTAA
SARS-CoV-2_400_63_LEFT_0 ATAGATTATGTACCACTAAAGTCTGCTACGTGTA
SARS-CoV-2_400_63_RIGHT_0 CATTTGAGCTTTGGGCTAAGCGCAAC
SARS-CoV-2_400_64_LEFT_0 GTTGATGTAGAATTGTTTGAAAATAAAAC
SARS-CoV-2_400_64_RIGHT_0 GTCTTAATGGAGTCACATTAATTGGAGAAG
SARS-CoV-2_400_65_LEFT_0 GTGTTCTTATTACAGAAGGTAGTGTT
SARS-CoV-2_400_65_RIGHT_0 GATTTTATTCCTATGGACAGTACAGTTAAAAAC
SARS-CoV-2_400_66_LEFT_0 TACTGATTGGACTAGCTAAACGTTTTAAGG
SARS-CoV-2_400_66_RIGHT_0 CAAAATTATGGTGATAGTGCAACATTACC
SARS-CoV-2_400_67_LEFT_1 TAGTCAAGCGTGGCAACCGGGTGTTG
SARS-CoV-2_400_67_RIGHT_1 GGGATCTCATTATTAGTGATATGTACGACCCTA
SARS-CoV-2_400_68_LEFT_0 GTGCAACTGTACATACAGCTAATAAAT
SARS-CoV-2_400_68_RIGHT_0 ATTCTTTATTTGACATGAGTAAATTTCCCC
SARS-CoV-2_400_69_LEFT_0 TGCAAATTACATATTTTGGAGGAATACAAA
SARS-CoV-2_400_69_RIGHT_0 CATTCAACTCAGGACTTGTTCTTACC
SARS-CoV-2_400_6_LEFT_1 AGAAGGTTCCGAAGGTCTTAAT
SARS-CoV-2_400_6_RIGHT_1 AGGCCGCTATAACAATACTAGATGGAA
SARS-CoV-2_400_70_LEFT_0 CTAGTCTCTAGTCAGTGTGTTAATCTTA
SARS-CoV-2_400_70_RIGHT_0 GTTGTTATTAAAGTCTGTGAATTTCAATTTTGT
SARS-CoV-2_400_71_LEFT_0 TTTTGGTACTACTTTAGATTCGAAGACC
SARS-CoV-2_400_71_RIGHT_0 GCCAATAGGTATTAACATCACTAGGTTT
SARS-CoV-2_400_72_LEFT_0 AAATATATTCTAAGCACACGCCTATTAATTTAG
SARS-CoV-2_400_72_RIGHT_0 AACAGAATCTATTGTTAGATTTCCTAATAT
SARS-CoV-2_400_73_LEFT_0 CTTCACTGTAGAAAAAGGAATCTATCAA
SARS-CoV-2_400_73_RIGHT_0 ACAGGCTGCGTTATAGCTTGGAATTCT
SARS-CoV-2_400_74_LEFT_0 AGATTCATTTGTAATTAGAGGTGATGAAGTCA
SARS-CoV-2_400_74_RIGHT_0 CTGTTTGTGGACCTAAAAAGT
SARS-CoV-2_400_75_LEFT_1 AGTAGTAGTACTTTCTTTTGAACTTCTACAT
SARS-CoV-2_400_75_RIGHT_1 GTGTTTATTCTACAGGTTCTAATGTT
SARS-CoV-2_400_76_LEFT_0 CTGCCTTTCCAACAATTTGGCAGAGACAT
SARS-CoV-2_400_76_RIGHT_0 TGTAGCTAGTCAATCCATCATT
SARS-CoV-2_400_77_LEFT_0 GCGCTAGTTATCAGACTCAGACTAAT
SARS-CoV-2_400_77_RIGHT_0 TTTACAAAACACCACCAATTAAAGATTTTG
SARS-CoV-2_400_78_LEFT_0 AGTTTTTGTACACAATTAAACCGTGCTTTA
SARS-CoV-2_400_78_RIGHT_0 GACCTTTGGTGCAGGTGCTGCA
SARS-CoV-2_400_79_LEFT_0 TTGCTCAATACACTTCTGCACTGTTAGCG
SARS-CoV-2_400_79_RIGHT_0 GGTTGATCACAGGCAGACTTCAAAG
SARS-CoV-2_400_7_LEFT_2 TTGTACGATCAATTTTCTCCCGC
SARS-CoV-2_400_7_RIGHT_2 AAGGAAATTAAGGAGAGTGTTCAGA
SARS-CoV-2_400_80_LEFT_0 AACAACTTAGCTCCAATTTTGGTGCA
SARS-CoV-2_400_80_RIGHT_0 CTTTCCTCGTGAAGGTGTCTTTGT
SARS-CoV-2_400_81_LEFT_0 ATGTCCCTGCACAAGAAAAGAAC
SARS-CoV-2_400_81_RIGHT_0 CCAAGAATTTAAATGAATCTCTCATCGATCT
SARS-CoV-2_400_82_LEFT_0 GACATCTCTGGCATTAATGCTTCAGTTGT
SARS-CoV-2_400_82_RIGHT_0 TTTGAAGCAAGGTGAAATCAAGGATGCTA
SARS-CoV-2_400_83_LEFT_0 AAACGAACTTATGGATTTGTTTATGAGAAT
SARS-CoV-2_400_83_RIGHT_0 AAGAATAATAATGAGGCTTTGGCTTTGCTGGAA
SARS-CoV-2_400_84_LEFT_2 ACTCACACCTTTTGCTCGTTGCTGCTG
SARS-CoV-2_400_84_RIGHT_2 ACTGGTGTTGAACATGTTACCTTC
SARS-CoV-2_400_85_LEFT_0 CTATTACCAGCTGTACTCAACTCAATTG
SARS-CoV-2_400_85_RIGHT_0 GTCTTGTAAAACCTTCTTTTTACGTTTAC
SARS-CoV-2_400_86_LEFT_0 GCGCTTCGATTGTGTGCGTACTG
SARS-CoV-2_400_86_RIGHT_0 AAATTGGATCACCGGTGGAATTGCTA
SARS-CoV-2_400_87_LEFT_1 TTCCTTACATGGATTTGTCTTCTACAAT
SARS-CoV-2_400_87_RIGHT_1 GACATCAAGGACCTGCCTAA
SARS-CoV-2_400_88_LEFT_2 TCGTATTGCTGGACACCATCTAG
SARS-CoV-2_400_88_RIGHT_2 TGAAGAGCAACCAATGGAGATTGATTA
SARS-CoV-2_400_89_LEFT_2 CTCGTTGACTTTCAGGTTACTATAGC
SARS-CoV-2_400_89_RIGHT_0 TCCTGACGGCGTAAAACACG
SARS-CoV-2_400_8_LEFT_0 ATTGTCGGTGGACAAATTGTCAC
SARS-CoV-2_400_8_RIGHT_0 TTGTATTAACGGGCTTATGTTGCTCG
SARS-CoV-2_400_90_LEFT_0 GCTGATAACAAATTTGCACTGACTTGCT
SARS-CoV-2_400_90_RIGHT_0 ATTTCACCAAGAATGTAGTTTAC
SARS-CoV-2_400_91_LEFT_0 TTCTCACTTGAACTGCAAGATCATAATG
SARS-CoV-2_400_91_RIGHT_0 AGAGTATCATGACGTTCGTGTTGTTTTA
SARS-CoV-2_400_92_LEFT_0 CCTTTTACAATTAATTGCCAGGAACCTAAAT
SARS-CoV-2_400_92_RIGHT_0 TTGGCTACTACCGAAGAGCTACCAGA
SARS-CoV-2_400_93_LEFT_0 GGCGTTCCAATTAACACCAA
SARS-CoV-2_400_93_RIGHT_0 ATTCAACTCCAGGCAGCAGTAGGG
SARS-CoV-2_400_94_LEFT_0 CTCTTCTCGTTCCTCATCACG
SARS-CoV-2_400_94_RIGHT_0 TCTTCGGAATGTCGCGCATTG
SARS-CoV-2_400_95_LEFT_0 ACATTGGCCGCAAATTGCACAATT
SARS-CoV-2_400_95_RIGHT_0 ACAAGGCAGATGGGCTATATA
SARS-CoV-2_400_96_LEFT_1 GGATGATTTCTCCAAACAATTGCA
SARS-CoV-2_400_96_RIGHT_0 TAGCTTCTTAGGAGAATGACAAAAAAAAAAAAA
SARS-CoV-2_400_9_LEFT_0 CTGGTGATTTACAACCATTAGAACAACCTA
SARS-CoV-2_400_9_RIGHT_0 TTTGCAACCAGTATCTGAATTACTTACACCACT
All Primer Sets