Primer Set: NEB RSV Module


IGV Visualization:


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Primers:

Name Locus Category Sequence
PM1_panr_Amp11_l GGTGTAACDACACCTKTAAGCAC
PM1_panr_Amp11_r AATGTCTTTATRATYCCACGATT
PM1_panr_Amp13_l GGGGCAAATATGTCRCGAAG
PM1_panr_Amp13_r TKATGGTTATGCTYTTGTGGAT
PM1_panr_Amp17_l AACAACYCKAATCATGTGGTATC
PM1_panr_Amp17_r CAARTTRGGATCACCACCACC
PM1_panr_Amp19_l GCTTTAGGRTCTGARAGGC
PM1_panr_Amp19_r GCAGGGAATTCRCATGGTCT
PM1_rsva_Amp15a-alt1_r RCTYAATAGWATTATCCATCTGCC
PM1_rsva_Amp15a_l CAATGGTCCTTATCTCAAAAATGAT
PM1_rsva_Amp15a_r AGWATTATCCATCTGCCATTT
PM1_rsva_Amp1a_l ACGSGAAAAAATGCGTACAAC
PM1_rsva_Amp1a_l_alt1 GCRTAAACCAARAAAATGGG
PM1_rsva_Amp1a_r TRTCTCCTGTGCTCCGTTGG
PM1_rsva_Amp21a_l CATTCTYAGCCARGATGCAAG
PM1_rsva_Amp21a_r GCCAAGGAAGCATGCARTAAAG
PM1_rsva_Amp3a_l TGATGTTACGGTGGGGRGTC
PM1_rsva_Amp3a_r GGYTTYCTTTGATAATTGGGCTTG
PM1_rsva_Amp5a_l ACWTCTGCTCGRGATGGT
PM1_rsva_Amp5a_r RAATTTGCTRGGCATTTGTGC
PM1_rsva_Amp7a_alt_r GACTTTGTKGTTTGCHGAGGC
PM1_rsva_Amp7a_l CAACCACYGAATTCAAAAATGC
PM1_rsva_Amp7a_r GATTCCAAGCTGRGGATYCTG
PM1_rsva_Amp9a_l AGCATATGCAGCAACAATCCAAC
PM1_rsva_Amp9a_r GCAACTGCAATTCTGTTACAGCA
PM1_rsvb_Amp15b_l CCACHCAACAATTTCTYCAACATC
PM1_rsvb_Amp15b_r TTGAATCCRCATCTCARCCC
PM1_rsvb_Amp1b_l ACGCGAAAAAATGCGTACTACA
PM1_rsvb_Amp1b_r TGTTTTTGCACATCATAATTGGG
PM1_rsvb_Amp21b_l TTCAGATCTTCTTTGTGTTTTGG
PM1_rsvb_Amp21b_r ATGCCAAGGAAGCATGCAAT
PM1_rsvb_Amp3b-alt1_l TGTCCARGCAGAAATGGAAC
PM1_rsvb_Amp3b_l TGTCCARGCAGAAATGGAGC
PM1_rsvb_Amp3b_r AARGGGTTRTCACTTGGGGTG
PM1_rsvb_Amp5b_l GCAAGTGCWGGACCYACTTC
PM1_rsvb_Amp5b_r ATTTGWGCCAGCACAGCACT
PM1_rsvb_Amp7b_l TGGWGCCTACCTRGAAAAAGAG
PM1_rsvb_Amp7b_r GTCCTGGCAGTGCGTTGATT
PM1_rsvb_Amp9b-alt1_l GGYAATAATCAACTYTGCAAATCC
PM1_rsvb_Amp9b-alt1_r CCTYTTYTTGCTTATTGATACATTTRGG
PM1_rsvb_Amp9b_l GGYAACAATCAACTYTGCAAATCC
PM1_rsvb_Amp9b_r TTYTTGCTTATTGATACATTTRGG
PM2_panr_Amp16_l TTGACATGGAAAGAYATYAGCC
PM2_panr_Amp16_r AACATWCCTGGTTGCATWGC
PM2_panr_Amp20_l AACWCGTGGTGARAGAGGACC
PM2_panr_Amp20_r TGTTAACAACCCARGGGCAWAC
PM2_panr_Amp22_l AACCAACTTTACACYACYACTTC
PM2_panr_Amp2_l TGGGGCAAATACAAARATGGC
PM2_panr_Amp2_r CCCATTATGCCTAGRCCWGC
PM2_panr_Amp4_l CATGGARAAGTTTGCWCCTG
PM2_panr_Amp4_r TGTCTTTTGCCATYTTTTCRCTTTC
PM2_panr_Amp6_l RCTTCACGARGGCTCCACAT
PM2_panr_Amp6_r WCGTGTAGCTGTRTGCTTCCAAT
PM2_rsva_Amp10a_l TGGGGCAAATAACAATGGAKTT
PM2_rsva_Amp10a_r TGCATTGTCACARTACCAYCCTC
PM2_rsva_Amp12a_l CAAAAACAGATGTRAGCAGCTCYG
PM2_rsva_Amp12a_r ARTGCATGRGGTGGCCATT
PM2_rsva_Amp14a_l TCTGTTAAAAAGATTGCCAGC
PM2_rsva_Amp14a_r TTTTGYCTGCTTTAAGRTGAGATTG
PM2_rsva_Amp18a_l GAGGTGAAAGTCTATTATGCAGTT
PM2_rsva_Amp18a_r TGGCAGAWGTYTTTTCCAGT
PM2_rsva_Amp22a_r ACGAGAAAAAAAGTGTCAAAAACTAA
PM2_rsva_Amp22a_r_alt1 TGTTGATYTGAARTTTAAAACATG
PM2_rsva_Amp8a_l TCATATTCATWGCCTCDGCAAAC
PM2_rsva_Amp8a_r TGGGCTTGGTRGTGGTTYTC
PM2_rsvb_Amp10b_l CCAAATGCAATGGAACTGACAC
PM2_rsvb_Amp10b_r YCCTGCATTATCACARTACCATCC
PM2_rsvb_Amp12b_l TTGACATTACCAARTGAAGTCAGYC
PM2_rsvb_Amp12b_r GCATGAGRAGGCCATTCAAART
PM2_rsvb_Amp14b_l TGAAGAACCCAATTCACCYAAG
PM2_rsvb_Amp14b_r GCAATTTGTTCAGACGAGGACAT
PM2_rsvb_Amp18b_l TYTGCAACTYCGAAATCATGC
PM2_rsvb_Amp18b_r TCCATTGTGAACATAATACTWGGYG
PM2_rsvb_Amp22b_r ACGAGAAAAAAAGTGTCAAAAACTAATG
PM2_rsvb_Amp8b_l GGGCAAATGCAACMATGTCC
PM2_rsvb_Amp8b_r CCATGGTTATTTGCCCCAGRT
All Primer Sets