Primer Set: Covid Detective

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{"data_server":"https://primer-monitor.neb.com/igvstatic","organism_slug":"sars-cov-2","organism_name":"SARS-CoV-2","reference_accession":"NC_045512.2","primer_set_display_name":"Covid Detective","primer_set_name":"Covid_Detective","initial_lineage":"XFG","lineage_names":{"XFZ.4.1":"XFZ.4.1*","XFG":"XFG*","TA":"TA*","PJ":"PJ*","PG.3.2":"PG.3.2*","XFZ.4":"XFZ.4*","A":"A*","RV.1":"RV.1*","PG.3":"PG.3*","B.60":"B.60*","RE.1":"RE.1*","RE.2.1":"RE.2.1*","ST":"ST*","SW.2.1":"SW.2.1*","XFG.26":"XFG.26*","TA.1":"TA.1*","SW.2":"SW.2*","PQ":"PQ*","PQ.2":"PQ.2*","RW":"RW*","XFZ.4.1.2":"XFZ.4.1.2*","SV":"SV*","RV":"RV*","XFG.2":"XFG.2*","TK":"TK*","ST.1":"ST.1*","PG":"PG*","SW":"SW*","XFG.6":"XFG.6*","RV.1.1":"RV.1.1*","RV.1.3":"RV.1.3*","RE":"RE*","SV.1":"SV.1*","PJ.2":"PJ.2*","PJ.2.1":"PJ.2.1*","RF":"RF*","LF":"LF*","XFZ":"XFZ*","B":"B*","SV.2":"SV.2*","RE.2":"RE.2*","TK.1":"TK.1*","BA.2.86":"BA.2.86*","RW.1":"RW.1*","RW.1.1":"RW.1.1*","all":"All"},"variant_overlaps_path":"/organisms/sars-cov-2/lineage_variants/variant_overlaps.json"}

Lineage:

XFG* (993 in most recent 30 days)   └ XFG.26*   └ XFG.2*   └ XFG.6* SW* (370 in most recent 30 days)   └ SW.2* (370 in most recent 30 days)     └ SW.2.1* (370 in most recent 30 days) RV* (333 in most recent 30 days)   └ RV.1* (286 in most recent 30 days)     └ RV.1.3* (138 in most recent 30 days)     └ RV.1.1* (119 in most recent 30 days) TA* (271 in most recent 30 days)   └ TA.1* (271 in most recent 30 days) RF* (172 in most recent 30 days) XFZ* (121 in most recent 30 days)   └ XFZ.4* (101 in most recent 30 days)     └ XFZ.4.1* (101 in most recent 30 days)       └ XFZ.4.1.2* (62 in most recent 30 days) ST* (107 in most recent 30 days)   └ ST.1* (107 in most recent 30 days) PJ* (103 in most recent 30 days)   └ PJ.2* (103 in most recent 30 days)     └ PJ.2.1* (98 in most recent 30 days) SV* (100 in most recent 30 days)   └ SV.2* (63 in most recent 30 days)   └ SV.1* (37 in most recent 30 days) TK* (90 in most recent 30 days)   └ TK.1* (90 in most recent 30 days) RW* (80 in most recent 30 days)   └ RW.1* (80 in most recent 30 days)     └ RW.1.1* (80 in most recent 30 days) PG*   └ PG.3*     └ PG.3.2* RE*   └ RE.1*   └ RE.2*     └ RE.2.1* PQ*   └ PQ.2* LF* A* B*   └ B.60* BA.2.86* All

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Primers:

Name	Locus	Category	Sequence
B1	N2	BIP	CGCATTGGCATGGAAGTCACT
B2	N2	BIP	TTTGATGGCACCTGTGTAG
B3	N2	B3	GAAATTTGGATCTTTGTCATCC
BIP	N2	BIP	CGCATTGGCATGGAAGTCACTTTGATGGCACCTGTGTAG
F1	N2	FIP	TGCGGCCAATGTTTGTAATCAG
F2	N2	FIP	CCAAGGAAATTTTGGGGA
F3	N2	F3	AACACAAGCTTTCGGCAG
FIP	N2	FIP	TGCGGCCAATGTTTGTAATCAGCCAAGGAAATTTTGGGGA
LB	N2	LB	ACCTTCGGGAACGTGGTT
LF	N2	LF	TTCCTTGTCTGATTAGTTC

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