Primer Set: ARTICv3

Organism: SARS-CoV-2
Amp. Method: qPCR

IGV Visualization:


Download Primer Set BED
Download Sequence FASTA

Primers:

Name Locus Category Sequence
nCoV-2019_10_LEFT Forward TGAGAAGTGCTCTGCCTATACAGT
nCoV-2019_10_RIGHT Reverse TCATCTAACCAATCTTCTTCTTGCTCT
nCoV-2019_11_LEFT Forward GGAATTTGGTGCCACTTCTGCT
nCoV-2019_11_RIGHT Reverse TCATCAGATTCAACTTGCATGGCA
nCoV-2019_12_LEFT Forward AAACATGGAGGAGGTGTTGCAG
nCoV-2019_12_RIGHT Reverse TTCACTCTTCATTTCCAAAAAGCTTGA
nCoV-2019_13_LEFT Forward TCGCACAAATGTCTACTTAGCTGT
nCoV-2019_13_RIGHT Reverse ACCACAGCAGTTAAAACACCCT
nCoV-2019_14_LEFT Forward CATCCAGATTCTGCCACTCTTGT
nCoV-2019_14_LEFT_alt4 Forward TGGCAATCTTCATCCAGATTCTGC
nCoV-2019_14_RIGHT Reverse AGTTTCCACACAGACAGGCATT
nCoV-2019_14_RIGHT_alt2 Reverse TGCGTGTTTCTTCTGCATGTGC
nCoV-2019_15_LEFT Forward ACAGTGCTTAAAAAGTGTAAAAGTGCC
nCoV-2019_15_LEFT_alt1 Forward AGTGCTTAAAAAGTGTAAAAGTGCCT
nCoV-2019_15_RIGHT Reverse AACAGAAACTGTAGCTGGCACT
nCoV-2019_15_RIGHT_alt3 Reverse ACTGTAGCTGGCACTTTGAGAGA
nCoV-2019_16_LEFT Forward AATTTGGAAGAAGCTGCTCGGT
nCoV-2019_16_RIGHT Reverse CACAACTTGCGTGTGGAGGTTA
nCoV-2019_17_LEFT Forward CTTCTTTCTTTGAGAGAAGTGAGGACT
nCoV-2019_17_RIGHT Reverse TTTGTTGGAGTGTTAACAATGCAGT
nCoV-2019_18_LEFT Forward TGGAAATACCCACAAGTTAATGGTTTAAC
nCoV-2019_18_LEFT_alt2 Forward ACTTCTATTAAATGGGCAGATAACAACTGT
nCoV-2019_18_RIGHT Reverse AGCTTGTTTACCACACGTACAAGG
nCoV-2019_18_RIGHT_alt1 Reverse GCTTGTTTACCACACGTACAAGG
nCoV-2019_19_LEFT Forward GCTGTTATGTACATGGGCACACT
nCoV-2019_19_RIGHT Reverse TGTCCAACTTAGGGTCAATTTCTGT
nCoV-2019_1_LEFT Forward ACCAACCAACTTTCGATCTCTTGT
nCoV-2019_1_RIGHT Reverse CATCTTTAAGATGTTGACGTGCCTC
nCoV-2019_20_LEFT Forward ACAAAGAAAACAGTTACACAACAACCA
nCoV-2019_20_RIGHT Reverse ACGTGGCTTTATTAGTTGCATTGTT
nCoV-2019_21_LEFT Forward TGGCTATTGATTATAAACACTACACACCC
nCoV-2019_21_RIGHT Reverse TAGATCTGTGTGGCCAACCTCT
nCoV-2019_21_RIGHT_alt0 Reverse GATCTGTGTGGCCAACCTCTTC
nCoV-2019_22_LEFT Forward ACTACCGAAGTTGTAGGAGACATTATACT
nCoV-2019_22_RIGHT Reverse ACAGTATTCTTTGCTATAGTAGTCGGC
nCoV-2019_23_LEFT Forward ACAACTACTAACATAGTTACACGGTGT
nCoV-2019_23_RIGHT Reverse ACCAGTACAGTAGGTTGCAATAGTG
nCoV-2019_24_LEFT Forward AGGCATGCCTTCTTACTGTACTG
nCoV-2019_24_RIGHT Reverse ACATTCTAACCATAGCTGAAATCGGG
nCoV-2019_25_LEFT Forward GCAATTGTTTTTCAGCTATTTTGCAGT
nCoV-2019_25_RIGHT Reverse ACTGTAGTGACAAGTCTCTCGCA
nCoV-2019_26_LEFT Forward TTGTGATACATTCTGTGCTGGTAGT
nCoV-2019_26_RIGHT Reverse TCCGCACTATCACCAACATCAG
nCoV-2019_27_LEFT Forward ACTACAGTCAGCTTATGTGTCAACC
nCoV-2019_27_RIGHT Reverse AATACAAGCACCAAGGTCACGG
nCoV-2019_28_LEFT Forward ACATAGAAGTTACTGGCGATAGTTGT
nCoV-2019_28_RIGHT Reverse TGTTTAGACATGACATGAACAGGTGT
nCoV-2019_29_LEFT Forward ACTTGTGTTCCTTTTTGTTGCTGC
nCoV-2019_29_RIGHT Reverse AGTGTACTCTATAAGTTTTGATGGTGTGT
nCoV-2019_2_LEFT Forward CTGTTTTACAGGTTCGCGACGT
nCoV-2019_2_RIGHT Reverse TAAGGATCAGTGCCAAGCTCGT
nCoV-2019_30_LEFT Forward GCACAACTAATGGTGACTTTTTGCA
nCoV-2019_30_RIGHT Reverse ACCACTAGTAGATACACAAACACCAG
nCoV-2019_31_LEFT Forward TTCTGAGTACTGTAGGCACGGC
nCoV-2019_31_RIGHT Reverse ACAGAATAAACACCAGGTAAGAATGAGT
nCoV-2019_32_LEFT Forward TGGTGAATACAGTCATGTAGTTGCC
nCoV-2019_32_RIGHT Reverse AGCACATCACTACGCAACTTTAGA
nCoV-2019_33_LEFT Forward ACTTTTGAAGAAGCTGCGCTGT
nCoV-2019_33_RIGHT Reverse TGGACAGTAAACTACGTCATCAAGC
nCoV-2019_34_LEFT Forward TCCCATCTGGTAAAGTTGAGGGT
nCoV-2019_34_RIGHT Reverse AGTGAAATTGGGCCTCATAGCA
nCoV-2019_35_LEFT Forward TGTTCGCATTCAACCAGGACAG
nCoV-2019_35_RIGHT Reverse ACTTCATAGCCACAAGGTTAAAGTCA
nCoV-2019_36_LEFT Forward TTAGCTTGGTTGTACGCTGCTG
nCoV-2019_36_RIGHT Reverse GAACAAAGACCATTGAGTACTCTGGA
nCoV-2019_37_LEFT Forward ACACACCACTGGTTGTTACTCAC
nCoV-2019_37_RIGHT Reverse GTCCACACTCTCCTAGCACCAT
nCoV-2019_38_LEFT Forward ACTGTGTTATGTATGCATCAGCTGT
nCoV-2019_38_RIGHT Reverse CACCAAGAGTCAGTCTAAAGTAGCG
nCoV-2019_39_LEFT Forward AGTATTGCCCTATTTTCTTCATAACTGGT
nCoV-2019_39_RIGHT Reverse TGTAACTGGACACATTGAGCCC
nCoV-2019_3_LEFT Forward CGGTAATAAAGGAGCTGGTGGC
nCoV-2019_3_RIGHT Reverse AAGGTGTCTGCAATTCATAGCTCT
nCoV-2019_40_LEFT Forward TGCACATCAGTAGTCTTACTCTCAGT
nCoV-2019_40_RIGHT Reverse CATGGCTGCATCACGGTCAAAT
nCoV-2019_41_LEFT Forward GTTCCCTTCCATCATATGCAGCT
nCoV-2019_41_RIGHT Reverse TGGTATGACAACCATTAGTTTGGCT
nCoV-2019_42_LEFT Forward TGCAAGAGATGGTTGTGTTCCC
nCoV-2019_42_RIGHT Reverse CCTACCTCCCTTTGTTGTGTTGT
nCoV-2019_43_LEFT Forward TACGACAGATGTCTTGTGCTGC
nCoV-2019_43_RIGHT Reverse AGCAGCATCTACAGCAAAAGCA
nCoV-2019_44_LEFT Forward TGCCACAGTACGTCTACAAGCT
nCoV-2019_44_LEFT_alt3 Forward CCACAGTACGTCTACAAGCTGG
nCoV-2019_44_RIGHT Reverse AACCTTTCCACATACCGCAGAC
nCoV-2019_44_RIGHT_alt0 Reverse CGCAGACGGTACAGACTGTGTT
nCoV-2019_45_LEFT Forward TACCTACAACTTGTGCTAATGACCC
nCoV-2019_45_LEFT_alt2 Forward AGTATGTACAAATACCTACAACTTGTGCT
nCoV-2019_45_RIGHT Reverse AAATTGTTTCTTCATGTTGGTAGTTAGAGA
nCoV-2019_45_RIGHT_alt7 Reverse TTCATGTTGGTAGTTAGAGAAAGTGTGTC
nCoV-2019_46_LEFT Forward TGTCGCTTCCAAGAAAAGGACG
nCoV-2019_46_LEFT_alt1 Forward CGCTTCCAAGAAAAGGACGAAGA
nCoV-2019_46_RIGHT Reverse CACGTTCACCTAAGTTGGCGTA
nCoV-2019_46_RIGHT_alt2 Reverse CACGTTCACCTAAGTTGGCGTAT
nCoV-2019_47_LEFT Forward AGGACTGGTATGATTTTGTAGAAAACCC
nCoV-2019_47_RIGHT Reverse AATAACGGTCAAAGAGTTTTAACCTCTC
nCoV-2019_48_LEFT Forward TGTTGACACTGACTTAACAAAGCCT
nCoV-2019_48_RIGHT Reverse TAGATTACCAGAAGCAGCGTGC
nCoV-2019_49_LEFT Forward AGGAATTACTTGTGTATGCTGCTGA
nCoV-2019_49_RIGHT Reverse TGACGATGACTTGGTTAGCATTAATACA
nCoV-2019_4_LEFT Forward GGTGTATACTGCTGCCGTGAAC
nCoV-2019_4_RIGHT Reverse CACAAGTAGTGGCACCTTCTTTAGT
nCoV-2019_50_LEFT Forward GTTGATAAGTACTTTGATTGTTACGATGGT
nCoV-2019_50_RIGHT Reverse TAACATGTTGTGCCAACCACCA
nCoV-2019_51_LEFT Forward TCAATAGCCGCCACTAGAGGAG
nCoV-2019_51_RIGHT Reverse AGTGCATTAACATTGGCCGTGA
nCoV-2019_52_LEFT Forward CATCAGGAGATGCCACAACTGC
nCoV-2019_52_RIGHT Reverse GTTGAGAGCAAAATTCATGAGGTCC
nCoV-2019_53_LEFT Forward AGCAAAATGTTGGACTGAGACTGA
nCoV-2019_53_RIGHT Reverse AGCCTCATAAAACTCAGGTTCCC
nCoV-2019_54_LEFT Forward TGAGTTAACAGGACACATGTTAGACA
nCoV-2019_54_RIGHT Reverse AACCAAAAACTTGTCCATTAGCACA
nCoV-2019_55_LEFT Forward ACTCAACTTTACTTAGGAGGTATGAGCT
nCoV-2019_55_RIGHT Reverse GGTGTACTCTCCTATTTGTACTTTACTGT
nCoV-2019_56_LEFT Forward ACCTAGACCACCACTTAACCGA
nCoV-2019_56_RIGHT Reverse ACACTATGCGAGCAGAAGGGTA
nCoV-2019_57_LEFT Forward ATTCTACACTCCAGGGACCACC
nCoV-2019_57_RIGHT Reverse GTAATTGAGCAGGGTCGCCAAT
nCoV-2019_58_LEFT Forward TGATTTGAGTGTTGTCAATGCCAGA
nCoV-2019_58_RIGHT Reverse CTTTTCTCCAAGCAGGGTTACGT
nCoV-2019_59_LEFT Forward TCACGCATGATGTTTCATCTGCA
nCoV-2019_59_RIGHT Reverse AAGAGTCCTGTTACATTTTCAGCTTG
nCoV-2019_5_LEFT Forward TGGTGAAACTTCATGGCAGACG
nCoV-2019_5_RIGHT Reverse ATTGATGTTGACTTTCTCTTTTTGGAGT
nCoV-2019_60_LEFT Forward TGATAGAGACCTTTATGACAAGTTGCA
nCoV-2019_60_RIGHT Reverse GGTACCAACAGCTTCTCTAGTAGC
nCoV-2019_61_LEFT Forward TGTTTATCACCCGCGAAGAAGC
nCoV-2019_61_RIGHT Reverse ATCACATAGACAACAGGTGCGC
nCoV-2019_62_LEFT Forward GGCACATGGCTTTGAGTTGACA
nCoV-2019_62_RIGHT Reverse GTTGAACCTTTCTACAAGCCGC
nCoV-2019_63_LEFT Forward TGTTAAGCGTGTTGACTGGACT
nCoV-2019_63_RIGHT Reverse ACAAACTGCCACCATCACAACC
nCoV-2019_64_LEFT Forward TCGATAGATATCCTGCTAATTCCATTGT
nCoV-2019_64_RIGHT Reverse AGTCTTGTAAAAGTGTTCCAGAGGT
nCoV-2019_65_LEFT Forward GCTGGCTTTAGCTTGTGGGTTT
nCoV-2019_65_RIGHT Reverse TGTCAGTCATAGAACAAACACCAATAGT
nCoV-2019_66_LEFT Forward GGGTGTGGACATTGCTGCTAAT
nCoV-2019_66_RIGHT Reverse TCAATTTCCATTTGACTCCTGGGT
nCoV-2019_67_LEFT Forward GTTGTCCAACAATTACCTGAAACTTACT
nCoV-2019_67_RIGHT Reverse CAACCTTAGAAACTACAGATAAATCTTGGG
nCoV-2019_68_LEFT Forward ACAGGTTCATCTAAGTGTGTGTGT
nCoV-2019_68_RIGHT Reverse CTCCTTTATCAGAACCAGCACCA
nCoV-2019_69_LEFT Forward TGTCGCAAAATATACTCAACTGTGTCA
nCoV-2019_69_RIGHT Reverse TCTTTATAGCCACGGAACCTCCA
nCoV-2019_6_LEFT Forward GGTGTTGTTGGAGAAGGTTCCG
nCoV-2019_6_RIGHT Reverse TAGCGGCCTTCTGTAAAACACG
nCoV-2019_70_LEFT Forward ACAAAAGAAAATGACTCTAAAGAGGGTTT
nCoV-2019_70_RIGHT Reverse TGACCTTCTTTTAAAGACATAACAGCAG
nCoV-2019_71_LEFT Forward ACAAATCCAATTCAGTTGTCTTCCTATTC
nCoV-2019_71_RIGHT Reverse TGGAAAAGAAAGGTAAGAACAAGTCCT
nCoV-2019_72_LEFT Forward ACACGTGGTGTTTATTACCCTGAC
nCoV-2019_72_RIGHT Reverse ACTCTGAACTCACTTTCCATCCAAC
nCoV-2019_73_LEFT Forward CAATTTTGTAATGATCCATTTTTGGGTGT
nCoV-2019_73_RIGHT Reverse CACCAGCTGTCCAACCTGAAGA
nCoV-2019_74_LEFT Forward ACATCACTAGGTTTCAAACTTTACTTGC
nCoV-2019_74_RIGHT Reverse GCAACACAGTTGCTGATTCTCTTC
nCoV-2019_75_LEFT Forward AGAGTCCAACCAACAGAATCTATTGT
nCoV-2019_75_RIGHT Reverse ACCACCAACCTTAGAATCAAGATTGT
nCoV-2019_76_LEFT Forward AGGGCAAACTGGAAAGATTGCT
nCoV-2019_76_LEFT_alt3 Forward GGGCAAACTGGAAAGATTGCTGA
nCoV-2019_76_RIGHT Reverse ACACCTGTGCCTGTTAAACCAT
nCoV-2019_76_RIGHT_alt0 Reverse ACCTGTGCCTGTTAAACCATTGA
nCoV-2019_77_LEFT Forward CCAGCAACTGTTTGTGGACCTA
nCoV-2019_77_RIGHT Reverse CAGCCCCTATTAAACAGCCTGC
nCoV-2019_78_LEFT Forward CAACTTACTCCTACTTGGCGTGT
nCoV-2019_78_RIGHT Reverse TGTGTACAAAAACTGCCATATTGCA
nCoV-2019_79_LEFT Forward GTGGTGATTCAACTGAATGCAGC
nCoV-2019_79_RIGHT Reverse CATTTCATCTGTGAGCAAAGGTGG
nCoV-2019_7_LEFT Forward ATCAGAGGCTGCTCGTGTTGTA
nCoV-2019_7_LEFT_alt0 Forward CATTTGCATCAGAGGCTGCTCG
nCoV-2019_7_RIGHT Reverse TGCACAGGTGACAATTTGTCCA
nCoV-2019_7_RIGHT_alt5 Reverse AGGTGACAATTTGTCCACCGAC
nCoV-2019_80_LEFT Forward TTGCCTTGGTGATATTGCTGCT
nCoV-2019_80_RIGHT Reverse TGGAGCTAAGTTGTTTAACAAGCG
nCoV-2019_81_LEFT Forward GCACTTGGAAAACTTCAAGATGTGG
nCoV-2019_81_RIGHT Reverse GTGAAGTTCTTTTCTTGTGCAGGG
nCoV-2019_82_LEFT Forward GGGCTATCATCTTATGTCCTTCCCT
nCoV-2019_82_RIGHT Reverse TGCCAGAGATGTCACCTAAATCAA
nCoV-2019_83_LEFT Forward TCCTTTGCAACCTGAATTAGACTCA
nCoV-2019_83_RIGHT Reverse TTTGACTCCTTTGAGCACTGGC
nCoV-2019_84_LEFT Forward TGCTGTAGTTGTCTCAAGGGCT
nCoV-2019_84_RIGHT Reverse AGGTGTGAGTAAACTGTTACAAACAAC
nCoV-2019_85_LEFT Forward ACTAGCACTCTCCAAGGGTGTT
nCoV-2019_85_RIGHT Reverse ACACAGTCTTTTACTCCAGATTCCC
nCoV-2019_86_LEFT Forward TCAGGTGATGGCACAACAAGTC
nCoV-2019_86_RIGHT Reverse ACGAAAGCAAGAAAAAGAAGTACGC
nCoV-2019_87_LEFT Forward CGACTACTAGCGTGCCTTTGTA
nCoV-2019_88_LEFT Forward CCATGGCAGATTCCAACGGTAC
nCoV-2019_88_RIGHT Reverse TGGTCAGAATAGTGCCATGGAGT
nCoV-2019_89_LEFT Forward GTACGCGTTCCATGTGGTCATT
nCoV-2019_89_LEFT_alt2 Forward CGCGTTCCATGTGGTCATTCAA
nCoV-2019_89_RIGHT Reverse ACCTGAAAGTCAACGAGATGAAACA
nCoV-2019_89_RIGHT_alt4 Reverse ACGAGATGAAACATCTGTTGTCACT
nCoV-2019_8_LEFT Forward AGAGTTTCTTAGAGACGGTTGGGA
nCoV-2019_8_RIGHT Reverse GCTTCAACAGCTTCACTAGTAGGT
nCoV-2019_90_LEFT Forward ACACAGACCATTCCAGTAGCAGT
nCoV-2019_90_RIGHT Reverse TGAAATGGTGAATTGCCCTCGT
nCoV-2019_91_LEFT Forward TCACTACCAAGAGTGTGTTAGAGGT
nCoV-2019_91_RIGHT Reverse TTCAAGTGAGAACCAAAAGATAATAAGCA
nCoV-2019_92_LEFT Forward TTTGTGCTTTTTAGCCTTTCTGCT
nCoV-2019_92_RIGHT Reverse AGGTTCCTGGCAATTAATTGTAAAAGG
nCoV-2019_93_LEFT Forward TGAGGCTGGTTCTAAATCACCCA
nCoV-2019_93_RIGHT Reverse AGGTCTTCCTTGCCATGTTGAG
nCoV-2019_94_LEFT Forward GGCCCCAAGGTTTACCCAATAA
nCoV-2019_94_RIGHT Reverse TTTGGCAATGTTGTTCCTTGAGG
nCoV-2019_95_LEFT Forward TGAGGGAGCCTTGAATACACCA
nCoV-2019_95_RIGHT Reverse CAGTACGTTTTTGCCGAGGCTT
nCoV-2019_96_LEFT Forward GCCAACAACAACAAGGCCAAAC
nCoV-2019_96_RIGHT Reverse TAGGCTCTGTTGGTGGGAATGT
nCoV-2019_97_LEFT Forward TGGATGACAAAGATCCAAATTTCAAAGA
nCoV-2019_97_RIGHT Reverse ACACACTGATTAAAGATTGCTATGTGAG
nCoV-2019_98_LEFT Forward AACAATTGCAACAATCCATGAGCA
nCoV-2019_98_RIGHT Reverse TTCTCCTAAGAAGCTATTAAAATCACATGG
nCoV-2019_9_LEFT Forward TCCCACAGAAGTGTTAACAGAGGA
nCoV-2019_9_LEFT_alt4 Forward TTCCCACAGAAGTGTTAACAGAGG
nCoV-2019_9_RIGHT Reverse ATGACAGCATCTGCCACAACAC
nCoV-2019_9_RIGHT_alt2 Reverse GACAGCATCTGCCACAACACAG
All Primer Sets