Primer Set: Varskip Long

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{"data_server":"https://primer-monitor.neb.com/igvstatic","organism_slug":"sars-cov-2","organism_name":"SARS-CoV-2","reference_accession":"NC_045512.2","primer_set_display_name":"Varskip Long","primer_set_name":"Varskip_Long","initial_lineage":"SW.2","lineage_names":{"RE.2.1":"RE.2.1*","RE":"RE*","B.60":"B.60*","RW.1":"RW.1*","TK":"TK*","SW.2":"SW.2*","TA.1":"TA.1*","BA.2.86":"BA.2.86*","XFZ.4.1":"XFZ.4.1*","XFZ":"XFZ*","RW.1.1":"RW.1.1*","RE.1":"RE.1*","ST.1":"ST.1*","PG.3":"PG.3*","TK.1":"TK.1*","LF":"LF*","SW.2.1":"SW.2.1*","RE.2":"RE.2*","SB":"SB*","RV.1.1":"RV.1.1*","A":"A*","PG":"PG*","RF":"RF*","PJ":"PJ*","SV":"SV*","B":"B*","SV.1":"SV.1*","PJ.2.1":"PJ.2.1*","RV":"RV*","TA":"TA*","SW":"SW*","PJ.2":"PJ.2*","RV.1.3":"RV.1.3*","ST":"ST*","RW":"RW*","RV.1.1.1":"RV.1.1.1*","PG.3.2":"PG.3.2*","RV.1":"RV.1*","XFZ.4":"XFZ.4*","XFZ.4.1.2":"XFZ.4.1.2*","all":"All"},"variant_overlaps_path":"/organisms/sars-cov-2/lineage_variants/variant_overlaps.json"}

Lineage:

SW* (389 in most recent 30 days)   └ SW.2* (389 in most recent 30 days)     └ SW.2.1* (389 in most recent 30 days) TA* (341 in most recent 30 days)   └ TA.1* (341 in most recent 30 days) RV* (341 in most recent 30 days)   └ RV.1* (293 in most recent 30 days)     └ RV.1.3* (150 in most recent 30 days)     └ RV.1.1* (135 in most recent 30 days)       └ RV.1.1.1* (46 in most recent 30 days) RF* (276 in most recent 30 days) PJ* (146 in most recent 30 days)   └ PJ.2* (146 in most recent 30 days)     └ PJ.2.1* (134 in most recent 30 days) ST* (134 in most recent 30 days)   └ ST.1* (134 in most recent 30 days) SB* (129 in most recent 30 days) XFZ* (127 in most recent 30 days)   └ XFZ.4* (127 in most recent 30 days)     └ XFZ.4.1* (127 in most recent 30 days)       └ XFZ.4.1.2* (81 in most recent 30 days) TK* (113 in most recent 30 days)   └ TK.1* (113 in most recent 30 days) SV* (111 in most recent 30 days)   └ SV.1* (55 in most recent 30 days) RW* (104 in most recent 30 days)   └ RW.1* (104 in most recent 30 days)     └ RW.1.1* (104 in most recent 30 days) B*   └ B.60* PG*   └ PG.3*     └ PG.3.2* A* LF* BA.2.86* RE*   └ RE.1*   └ RE.2*     └ RE.2.1* All

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Primers:

Name	Locus	Category	Sequence
varskip_long-0317-1_10_LEFT		Forward	ATCAAGGGTACACACCACTGGT
varskip_long-0317-1_10_RIGHT		Reverse	GGAACACAACCATCTCTTGCATT
varskip_long-0317-1_11_LEFT		Forward	TGGCTAAATCTGAATTTGACCGTG
varskip_long-0317-1_11_RIGHT		Reverse	AGAATCAATTAAATTGTCATCTTCGTCCT
varskip_long-0317-1_12_LEFT		Forward	GAACCCATGCTTCAGTCAGCTG
varskip_long-0317-1_12_RIGHT		Reverse	GTTGTCTGATATCACACATTGTTGGT
varskip_long-0317-1_13_LEFT		Forward	TACGTGCTTTTCAGTAGCTGCA
varskip_long-0317-1_13_RIGHT		Reverse	AGACATCAGCATACTCCTGATTAGG
varskip_long-0317-1_14_LEFT		Forward	AGCAAAATGTTGGACTGAGACTGA
varskip_long-0317-1_14_RIGHT		Reverse	AGACATACTGTTCTAATGTTGAATTCACT
varskip_long-0317-1_15_LEFT		Forward	ATTCTACACTCCAGGGACCACC
varskip_long-0317-1_15_RIGHT		Reverse	ACGCACTACATTCCAAGGAAGT
varskip_long-0317-1_16_LEFT		Forward	ATGTACGTGCATGGATTGGCTT
varskip_long-0317-1_16_RIGHT		Reverse	ACAATTCTACATCAACACCATCAACT
varskip_long-0317-1_17_LEFT		Forward	TGTAGACATCATGCTAATGAGTACAGA
varskip_long-0317-1_17_RIGHT		Reverse	TCTGAATCGACAAGCAGCGTAC
varskip_long-0317-1_18_LEFT		Forward	AAGTGTGACCTTCAAAATTATGGTGA
varskip_long-0317-1_18_RIGHT		Reverse	ACCATCAATATTCTTAAACACAAATTCCCT
varskip_long-0317-1_19_LEFT		Forward	TTCGAAGACCCAGTCCCTACTT
varskip_long-0317-1_19_RIGHT		Reverse	ACACTGACACCACCAAAAGAACA
varskip_long-0317-1_1_LEFT		Forward	ACCAACCAACTTTCGATCTCTTGT
varskip_long-0317-1_1_RIGHT		Reverse	CGACCACCCTTACGAAGAATGG
varskip_long-0317-1_20_LEFT		Forward	CCAGCAACTGTTTGTGGACCTA
varskip_long-0317-1_20_RIGHT		Reverse	GCAAACTTTGAAGTCTGCCTGT
varskip_long-0317-1_21_LEFT		Forward	TTCTCTATGAGAACCAAAAATTGATTGC
varskip_long-0317-1_21_RIGHT		Reverse	ACAAAGTTTATACTCTGCAAGAAGTAGAC
varskip_long-0317-1_22_LEFT		Forward	GCTTATTGTTGGCGTTGCACTT
varskip_long-0317-1_22_RIGHT		Reverse	ACAGCTCCGATTACGAGTTCAC
varskip_long-0317-1_23_LEFT		Forward	TGTCTTCTACAATTTGCCTATGCC
varskip_long-0317-1_23_RIGHT		Reverse	GCACAATTCAATTAAAGGTGCTGATT
varskip_long-0317-1_24_LEFT		Forward	CTTTTGGTTCTCACTTGAACTGCA
varskip_long-0317-1_24_RIGHT		Reverse	TGTCATCCAATTTGATGGCACCT
varskip_long-0317-1_25_LEFT		Forward	GGCCCCAAGGTTTACCCAATAA
varskip_long-0317-1_25_RIGHT		Reverse	AATTTTACACATTAGGGCTCTTCCAT
varskip_long-0317-1_2_LEFT		Forward	GACGGGCGATTTTGTTAAAGCC
varskip_long-0317-1_2_RIGHT		Reverse	TGCAAGGGCACAGTACTTTTCT
varskip_long-0317-1_3_LEFT		Forward	TCATGCCTCTAAAAGCCCCAAA
varskip_long-0317-1_3_RIGHT		Reverse	TTCAGTTATAAATGGCTTAACTTCCTCT
varskip_long-0317-1_4_LEFT		Forward	AGCACGAAGTTCTACTTGCACC
varskip_long-0317-1_4_RIGHT		Reverse	TGTTTTACCTTCATGTGAATTATGAGGT
varskip_long-0317-1_5_LEFT		Forward	CCTACCACATTCCACCTAGATGG
varskip_long-0317-1_5_RIGHT		Reverse	CAAACGAATTTGATGTTTCAACTGGT
varskip_long-0317-1_6_LEFT		Forward	AGAAACCTGCTTCAAGAGAGCT
varskip_long-0317-1_6_RIGHT		Reverse	AGACATAAAAGGACCTTCTAACACCA
varskip_long-0317-1_7_LEFT		Forward	CTTGGCTTATGTGGTTAATAATTAATCTTGTAC
varskip_long-0317-1_7_RIGHT		Reverse	CCATGTGTCAAAATCAGCATGTTTG
varskip_long-0317-1_8_LEFT		Forward	ACAAAGATAGCACTTAAGGGTGGT
varskip_long-0317-1_8_RIGHT		Reverse	GTCATTGAGAGCCTTTGCGAGA
varskip_long-0317-1_9_LEFT		Forward	ACGTGTAGTCTTTAATGGTGTTTCC
varskip_long-0317-1_9_RIGHT		Reverse	AAGCTACAGTGGCAAGAGAAGG

All Primer Sets