Primer Set: Japan NIID

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{"data_server":"https://primer-monitor.neb.com/igvstatic","organism_slug":"sars-cov-2","organism_name":"SARS-CoV-2","reference_accession":"NC_045512.2","primer_set_display_name":"Japan NIID","primer_set_name":"Japan_NIID","initial_lineage":"XFG","lineage_names":{"XFZ":"XFZ*","A":"A*","RW":"RW*","PG.3.2":"PG.3.2*","PJ.2.1":"PJ.2.1*","PJ.2":"PJ.2*","RE":"RE*","B.60":"B.60*","SV":"SV*","PJ":"PJ*","ST.1":"ST.1*","B":"B*","RF":"RF*","LF":"LF*","RK":"RK*","PG":"PG*","RE.2":"RE.2*","SV.1":"SV.1*","TA.1":"TA.1*","XFG.6":"XFG.6*","GW":"GW*","BA.2.86":"BA.2.86*","PQ.2":"PQ.2*","RV.1.1":"RV.1.1*","TA":"TA*","SW.2.1":"SW.2.1*","RV.1.3":"RV.1.3*","RW.1.1":"RW.1.1*","RV.1":"RV.1*","RW.1":"RW.1*","PQ":"PQ*","SW.2":"SW.2*","XFG.26":"XFG.26*","PG.3":"PG.3*","TK.1":"TK.1*","TK":"TK*","SW":"SW*","RE.2.1":"RE.2.1*","XFG":"XFG*","XFG.2":"XFG.2*","RE.1":"RE.1*","ST":"ST*","RV":"RV*","all":"All"},"variant_overlaps_path":"/organisms/sars-cov-2/lineage_variants/variant_overlaps.json"}

Lineage:

XFG* (852 in most recent 30 days)   └ XFG.6*   └ XFG.26*   └ XFG.2* RV* (280 in most recent 30 days)   └ RV.1* (247 in most recent 30 days)     └ RV.1.3* (122 in most recent 30 days)     └ RV.1.1* (106 in most recent 30 days) SW* (269 in most recent 30 days)   └ SW.2* (269 in most recent 30 days)     └ SW.2.1* (266 in most recent 30 days) TA* (236 in most recent 30 days)   └ TA.1* (236 in most recent 30 days) RF* (142 in most recent 30 days) ST* (92 in most recent 30 days)   └ ST.1* (92 in most recent 30 days) RW* (92 in most recent 30 days)   └ RW.1* (92 in most recent 30 days)     └ RW.1.1* (92 in most recent 30 days) XFZ* (88 in most recent 30 days) SV* (84 in most recent 30 days)   └ SV.1* (44 in most recent 30 days) PJ* (70 in most recent 30 days)   └ PJ.2* (70 in most recent 30 days)     └ PJ.2.1* (67 in most recent 30 days) TK* (61 in most recent 30 days)   └ TK.1* (61 in most recent 30 days) RK* (36 in most recent 30 days) B*   └ B.60* LF* PG*   └ PG.3*     └ PG.3.2* GW* BA.2.86* PQ*   └ PQ.2* RE*   └ RE.2*     └ RE.2.1*   └ RE.1* A* All

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Primers:

Name	Locus	Category	Sequence
NIID_2019-nCOV_N_F	N	Forward	ATGTCGCGCATTGGCATGGA
NIID_2019-nCOV_N_P	N	Probe	ATGTCGCGCATTGGCATGGA
NIID_2019-nCOV_N_R	N	Reverse	TGGCAGCTGTGTAGGTCAACB

All Primer Sets