Primer Set: OmniSARS2

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{"data_server":"https://primer-monitor.neb.com/igvstatic","organism_slug":"sars-cov-2","organism_name":"SARS-CoV-2","reference_accession":"NC_045512.2","primer_set_display_name":"OmniSARS2","primer_set_name":"OmniSARS2","initial_lineage":"SW.2","lineage_names":{"PJ.2.1":"PJ.2.1*","XFZ.4":"XFZ.4*","RV.1.3":"RV.1.3*","RV.1":"RV.1*","SW.2":"SW.2*","TK":"TK*","TK.1":"TK.1*","SV":"SV*","SW":"SW*","XFZ.4.1.2":"XFZ.4.1.2*","ST.1":"ST.1*","RW.1.1":"RW.1.1*","PG":"PG*","RV.1.1":"RV.1.1*","SV.1":"SV.1*","PQ.2":"PQ.2*","XFZ":"XFZ*","TA":"TA*","A":"A*","RE.2.1":"RE.2.1*","PQ":"PQ*","PG.3":"PG.3*","TA.1":"TA.1*","RW":"RW*","RE.2":"RE.2*","RV":"RV*","RW.1":"RW.1*","PJ.2":"PJ.2*","LF":"LF*","RV.1.1.1":"RV.1.1.1*","RF":"RF*","BA.2.86":"BA.2.86*","PG.3.2":"PG.3.2*","B.60":"B.60*","SB":"SB*","SW.2.1":"SW.2.1*","XFZ.4.1":"XFZ.4.1*","B":"B*","PJ":"PJ*","RE":"RE*","ST":"ST*","RE.1":"RE.1*","all":"All"},"variant_overlaps_path":"/organisms/sars-cov-2/lineage_variants/variant_overlaps.json"}

Lineage:

SW* (388 in most recent 30 days)   └ SW.2* (388 in most recent 30 days)     └ SW.2.1* (388 in most recent 30 days) RV* (340 in most recent 30 days)   └ RV.1* (292 in most recent 30 days)     └ RV.1.3* (149 in most recent 30 days)     └ RV.1.1* (135 in most recent 30 days)       └ RV.1.1.1* (46 in most recent 30 days) TA* (334 in most recent 30 days)   └ TA.1* (334 in most recent 30 days) RF* (273 in most recent 30 days) PJ* (145 in most recent 30 days)   └ PJ.2* (145 in most recent 30 days)     └ PJ.2.1* (133 in most recent 30 days) ST* (133 in most recent 30 days)   └ ST.1* (133 in most recent 30 days) SB* (129 in most recent 30 days) XFZ* (124 in most recent 30 days)   └ XFZ.4* (124 in most recent 30 days)     └ XFZ.4.1* (124 in most recent 30 days)       └ XFZ.4.1.2* (79 in most recent 30 days) TK* (112 in most recent 30 days)   └ TK.1* (112 in most recent 30 days) SV* (111 in most recent 30 days)   └ SV.1* (55 in most recent 30 days) RW* (104 in most recent 30 days)   └ RW.1* (104 in most recent 30 days)     └ RW.1.1* (104 in most recent 30 days) A* PQ*   └ PQ.2* LF* PG*   └ PG.3*     └ PG.3.2* BA.2.86* B*   └ B.60* RE*   └ RE.2*     └ RE.2.1*   └ RE.1* All

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Primers:

Name	Locus	Category	Sequence
1ab1917F1	ORF1ab	Forward	AGAGTTTCTTAGAGACGGTTGG
1ab1977P1	ORF1ab	Probe	TGTCGGTGGACAAATTGTCACCTGT
1ab2003R1	ORF1ab	Reverse	TGAACACTCTCCTTAATTTCCTTTG
E143R1	Envelope	Reverse	AAGAAGGTTTTACAAGACTCACGT
E22F1	Envelope	Forward	AGACAGGTACGTTAATAGTTAATAGCG
E84P1	Envelope	Probe	AGTTACACTAGCCATCCTTACTGCGC
S1703F1	Spike	Forward	ACATTGCTGACACTACTGATGC
S1725P1	Spike	Probe	TGTCCGTGATCCACAGACACTTGAG
S1797R1	Spike	Reverse	CTGGTTAGAAGTATTTGTTCCTGGT

All Primer Sets