Primer Set: VarSkip 1a


IGV Visualization:


Download Primer Set BED
Download Sequence FASTA

Primers:

Name Locus Category Sequence
varskip-0317-1_10_LEFT Forward AGTTTGTGTAGATACTGTTCGCACA
varskip-0317-1_10_RIGHT Reverse AGGCACTTTTACACTTTTTAAGCACT
varskip-0317-1_11_LEFT Forward ACCTACTAAAAAGGCTGGTGGC
varskip-0317-1_11_RIGHT Reverse GAAGAAGTAAGATAACCATTATACGCTGT
varskip-0317-1_12_LEFT Forward ACTCTTGTTACAATGCCACTTGG
varskip-0317-1_12_RIGHT Reverse AGTACTCAAAAGCCTCAACACGT
varskip-0317-1_13_LEFT Forward CGCAAGTTGTGGACATGTCAAT
varskip-0317-1_13_RIGHT Reverse TGTGCCCATGTACATAACAGCT
varskip-0317-1_14_LEFT Forward ACCTGCTCTACAAGATGCTTATTACA
varskip-0317-1_14_RIGHT Reverse TTTCTGTACAAACAACACCATCCAA
varskip-0317-1_15_LEFT Forward ACTTTGTATTGCATAGACGGTGC
varskip-0317-1_15_RIGHT Reverse GCGTCCTCTGACTTCAGTACAT
varskip-0317-1_16_LEFT Forward TTGTTACATAAACCTATTGTTTGGCATG
varskip-0317-1_16_RIGHT Reverse AAGGCATATAATTAGTACAAACACGGT
varskip-0317-1_17_LEFT Forward TGTAGACAATTCTAGTCTTACTATTAAGAAACC
varskip-0317-1_17_RIGHT Reverse ACCACTAAGACAAACACTACAAGGT
varskip-0317-1_18_LEFT Forward TCAACCGCTGCTTTAGGTGTTT
varskip-0317-1_18_RIGHT Reverse AGACATAAAAGGACCTTCTAACACCAT
varskip-0317-1_19_LEFT Forward TGGTTAGAATGTACATCTTCTTTGCA
varskip-0317-1_19_RIGHT Reverse ATCAGACACTAATGCCTGATCTAGT
varskip-0317-1_1_LEFT Forward GGTAACAAACCAACCAACTTTCGA
varskip-0317-1_1_RIGHT Reverse CACCAAGTGTCTCACCACTACG
varskip-0317-1_20_LEFT Forward AGACAACCTGAGAGCTAATAACACT
varskip-0317-1_20_RIGHT Reverse ACGTTCCATATCAAAGCAATGTTGT
varskip-0317-1_21_LEFT Forward TCTGACATAGAAGTTACTGGCGAT
varskip-0317-1_21_RIGHT Reverse GCAATCAATGGGCAAGCTTTGT
varskip-0317-1_22_LEFT Forward AGGATACAAGGCTATTGATGGTGG
varskip-0317-1_22_RIGHT Reverse TCTGATCTTTCACAAGTGCCGT
varskip-0317-1_23_LEFT Forward TGAAAGTTTACGCCCTGACACA
varskip-0317-1_23_RIGHT Reverse AGGTGTGAACATAACCATCCACT
varskip-0317-1_24_LEFT Forward GGTGAATACAGTCATGTAGTTGCC
varskip-0317-1_24_RIGHT Reverse AACCACTCTGCAAAACAGCTGA
varskip-0317-1_25_LEFT Forward TGCGTAGTGATGTGCTATTACCT
varskip-0317-1_25_RIGHT Reverse TGGTGAACCATTGTAACAAGCTAAC
varskip-0317-1_26_LEFT Forward TGTTCAACTCAGGGTTATTGGACA
varskip-0317-1_26_RIGHT Reverse AAACGGCAATTCCAGTTTGAGC
varskip-0317-1_27_LEFT Forward GGAGACAGGTGGTTTCTCAATCG
varskip-0317-1_27_RIGHT Reverse TCCAACCATGTCATAATACGCATCA
varskip-0317-1_28_LEFT Forward GCCTTTTTACCTTTTGCTATGGGT
varskip-0317-1_28_RIGHT Reverse CGGTTGAGTAAACAAAAGAGGCC
varskip-0317-1_29_LEFT Forward GATGGTGCTAGGAGAGTGTGGA
varskip-0317-1_29_RIGHT Reverse TGGACACATTGAGCCCACAATT
varskip-0317-1_2_LEFT Forward GGCTTAGTAGAAGTTGAAAAAGGCG
varskip-0317-1_2_RIGHT Reverse AACGTTCCGTGTACCAAGCAAT
varskip-0317-1_30_LEFT Forward ATTGTTGGGTGTTGGTGGCAAA
varskip-0317-1_30_RIGHT Reverse GCATAGCACTAGTAACTTTTGCCC
varskip-0317-1_31_LEFT Forward GTTGAAGAAGTCTTTGAATGTGGCT
varskip-0317-1_31_RIGHT Reverse GCTAACGCATTGTCATCAGTGC
varskip-0317-1_32_LEFT Forward CATGGCCTCTTATTGTAACAGCTT
varskip-0317-1_32_RIGHT Reverse ATTGCCTGACCAGTACCAGTGT
varskip-0317-1_33_LEFT Forward AGAAGTGCCTGCCAATTCAACT
varskip-0317-1_33_RIGHT Reverse CGTCCTTTTCTTGGAAGCGACA
varskip-0317-1_34_LEFT Forward GTAAGTGCAGCCCGTCTTACAC
varskip-0317-1_34_RIGHT Reverse TCGCATGGCATCACAGAATTGT
varskip-0317-1_35_LEFT Forward ACTTGTCACATACAATTGTTGTGATGA
varskip-0317-1_35_RIGHT Reverse ACAAATATTTTTCTCACTAGTGGTCCA
varskip-0317-1_36_LEFT Forward ACCGTTATTTTAAATATTGGGATCAGACA
varskip-0317-1_36_RIGHT Reverse ACAAATAGTAGTTGTCTGATATCACACAT
varskip-0317-1_37_LEFT Forward TGTTGCTTTTCAAACTGTCAAACC
varskip-0317-1_37_RIGHT Reverse TGCTTGTTCCAATTACTACAGTAGCT
varskip-0317-1_38_LEFT Forward TGAATCTTAAGTATGCCATTAGTGCAA
varskip-0317-1_38_RIGHT Reverse AAAGTCTGTGTTGTAAATTGCGGA
varskip-0317-1_39_LEFT Forward TGTGTGGCGGTTCACTATATGT
varskip-0317-1_39_RIGHT Reverse AGCTAAAGACACGAACCGTTCA
varskip-0317-1_3_LEFT Forward CCTGATGGCTACCCTCTTGAGT
varskip-0317-1_3_RIGHT Reverse ATTCGGCAAGACTATGCTCAGG
varskip-0317-1_40_LEFT Forward GACCTCATGAATTTTGCTCTCAACA
varskip-0317-1_40_RIGHT Reverse GCTCATACCTCCTAAGTAAAGTTGAGT
varskip-0317-1_41_LEFT Forward AAGATGTGGTGCTTGCATACGT
varskip-0317-1_41_RIGHT Reverse ACAACAGCATCACCATAGTCACC
varskip-0317-1_42_LEFT Forward GCTACTGTACGTGAAGTGCTGT
varskip-0317-1_42_RIGHT Reverse CAAAACACTCTACACGAGCACG
varskip-0317-1_43_LEFT Forward GCAAAAGTATTCTACACTCCAGGGA
varskip-0317-1_43_RIGHT Reverse TTGAGCTGATTTGTCTTTATGTGCT
varskip-0317-1_44_LEFT Forward AGGGCACACTAGAACCAGAATATT
varskip-0317-1_44_RIGHT Reverse AGTCCTGTTACATTTTCAGCTTGTAA
varskip-0317-1_45_LEFT Forward ACAGCTCACTCTTGTAATGTAAACAG
varskip-0317-1_45_RIGHT Reverse GCGGTGGTTTAGCACTAACTCT
varskip-0317-1_46_LEFT Forward CGAGGGGTGTCATGCTACTAGA
varskip-0317-1_46_RIGHT Reverse ACACCTAGTCATGATTGCATCACA
varskip-0317-1_47_LEFT Forward CCTGTTGGCATCATTCTATTGGATT
varskip-0317-1_47_RIGHT Reverse ACCATCACAACCAGGCAAGTTA
varskip-0317-1_48_LEFT Forward GATGCACAGCCTTGTAGTGACA
varskip-0317-1_48_RIGHT Reverse CATCAAAGTGTCCCTTATTTACAACATT
varskip-0317-1_49_LEFT Forward TGTAGACATCATGCTAATGAGTACAGA
varskip-0317-1_49_RIGHT Reverse AACACTACCTTCTGTAATAAGAACACC
varskip-0317-1_4_LEFT Forward AAGCCACTTGCGAATTTTGTGG
varskip-0317-1_4_RIGHT Reverse TCTGTTCACCAATATTCCAGGCA
varskip-0317-1_50_LEFT Forward GCTCCAGCACATATATCTACTATTGGT
varskip-0317-1_50_RIGHT Reverse AGATGAACCTGTTTGCGCATCT
varskip-0317-1_51_LEFT Forward AGTCATAGTCAGTTAGGTGGTTTACA
varskip-0317-1_51_RIGHT Reverse AAAACAGCTGTACCTGGTGCAA
varskip-0317-1_52_LEFT Forward CCTAAAGGCATAATGATGAATGTCGC
varskip-0317-1_52_RIGHT Reverse TTTGCATGCATGACATAACCATCT
varskip-0317-1_53_LEFT Forward TGCTGATCTTTATAAGCTCATGGGA
varskip-0317-1_53_RIGHT Reverse CAAGTAACATTGGAAAAGAAAGGTAAGAA
varskip-0317-1_54_LEFT Forward GTTCTTGTTAACAACTAAACGAACAATGT
varskip-0317-1_54_RIGHT Reverse CCCTGTTTTCCTTCAAGGTCCA
varskip-0317-1_55_LEFT Forward ACGCTACTAATGTTGTTATTAAAGTCTGT
varskip-0317-1_55_RIGHT Reverse AGAAGTTTGATAGATTCCTTTTTCTACAGT
varskip-0317-1_56_LEFT Forward TGCAGCTTATTATGTGGGTTATCTTC
varskip-0317-1_56_RIGHT Reverse AATTACCACCAACCTTAGAATCAAGATT
varskip-0317-1_57_LEFT Forward TGCAGATTCATTTGTAATTAGAGGTGA
varskip-0317-1_57_RIGHT Reverse TCAAGTGTCTGTGGATCACGGA
varskip-0317-1_58_LEFT Forward CCAGCAACTGTTTGTGGACCTA
varskip-0317-1_58_RIGHT Reverse TGGGTATGGCAATAGAGTTATTAGAGT
varskip-0317-1_59_LEFT Forward TGTGACATACCCATTGGTGCAG
varskip-0317-1_59_RIGHT Reverse GGCCGTTAAACTTTTGTGCACA
varskip-0317-1_5_LEFT Forward GGCATCTTTTTCTGCTTCCACA
varskip-0317-1_5_RIGHT Reverse CCACCGACAATTTCACAAGCAC
varskip-0317-1_60_LEFT Forward ACCAGATCCATCAAAACCAAGCA
varskip-0317-1_60_RIGHT Reverse AATTTGCACTTCAGCCTCAACTT
varskip-0317-1_61_LEFT Forward TTCTTCCACAGCAAGTGCACTT
varskip-0317-1_61_RIGHT Reverse ACAACATCACAGTTACCAGACACA
varskip-0317-1_62_LEFT Forward AACTGCTCCTGCCATTTGTCAT
varskip-0317-1_62_RIGHT Reverse ACTGGCTCAGAGTCGTCTTCAT
varskip-0317-1_63_LEFT Forward GGAAAGTATGAGCAGTATATAAAATGGCC
varskip-0317-1_63_RIGHT Reverse ACAAAGTTTATACTCTGCAAGAAGTAGAC
varskip-0317-1_64_LEFT Forward ATCATAACCCTCAAAAAGAGATGGC
varskip-0317-1_64_RIGHT Reverse CGTCGATTGTGTGAATTTGGACA
varskip-0317-1_65_LEFT Forward AAATGGGAATCTGGAGTAAAAGACTG
varskip-0317-1_65_RIGHT Reverse CATGGCTAAAATTAAAGTTCCAAACAGA
varskip-0317-1_66_LEFT Forward TGTGTGCGTACTGCTGCAATAT
varskip-0317-1_66_RIGHT Reverse TTCTAGAAGCGGTCTGGTCAGA
varskip-0317-1_67_LEFT Forward TAGCTTGTTTTGTGCTTGCTGC
varskip-0317-1_67_RIGHT Reverse TCCAAATGGAAACTTTAAAAGTCCTCA
varskip-0317-1_68_LEFT Forward TAGCAGGTGACTCAGGTTTTGC
varskip-0317-1_68_RIGHT Reverse ACTTCCTCTTGTCTGATGAACAGT
varskip-0317-1_69_LEFT Forward AGGGCAATTCACCATTTCATCCT
varskip-0317-1_69_RIGHT Reverse GCACAATTCAATTAAAGGTGCTGAT
varskip-0317-1_6_LEFT Forward CTACATTACAGGTGGTGTTGTTCAG
varskip-0317-1_6_RIGHT Reverse ATTTCGAGCAACATAAGCCCGT
varskip-0317-1_70_LEFT Forward CTTTTGGTTCTCACTTGAACTGCA
varskip-0317-1_70_RIGHT Reverse GGGGCCGACGTTGTTTTGAT
varskip-0317-1_71_LEFT Forward AGAGTATCATGACGTTCGTGTTGT
varskip-0317-1_71_RIGHT Reverse CTCTGCTCCCTTCTGCGTAGAA
varskip-0317-1_72_LEFT Forward GCTGGACTTCCCTATGGTGCTA
varskip-0317-1_72_RIGHT Reverse ACATTCCGAAGAACGCTGAAGC
varskip-0317-1_73_LEFT Forward GCCACTAAAGCATACAATGTAACACA
varskip-0317-1_73_RIGHT Reverse TTGTGCTATGTAGTTACGAGAATTCAT
varskip-0317-1_74_LEFT Forward ACACAGGTGCCATCAAATTGGA
varskip-0317-1_74_RIGHT Reverse GCACTACTAAAATTAATTTTACACATTAGGGC
varskip-0317-1_7_LEFT Forward TCTTCTTAGAGGGAGAAACACTTCC
varskip-0317-1_7_RIGHT Reverse ACCTTCTTCTTCATCCTCATCTGG
varskip-0317-1_8_LEFT Forward TCTGAATTACTTACACCACTGGGC
varskip-0317-1_8_RIGHT Reverse TTTAAGGCTCCTGCAACACCTC
varskip-0317-1_9_LEFT Forward AGACTATTGAAGTGAATAGTTTTAGTGGT
varskip-0317-1_9_RIGHT Reverse TCAGTTATAAATGGCTTAACTTCCTCTT
All Primer Sets